Phylogenetic Data for Select Australian Freshwater Fishes

The following clades are being generated as part of my PhD work on the biogeography of various Australian fish groups. They tend to be updated regularly as I gather more sequence data. Please do not use or copy these trees to anywhere else, they are only preliminary, and hence are very likely to change as more data is accumulated. Additionally, most of the sequences this is based on have not been thoroughly checked for reading errors. There are largely being placed here so others who have contributed to collection of samples and in other ways can see the progress.

Percichthyidae data, including cytochrome b and S7 intron data.

Rainbowfish data, including cytochrome b, S7 intron and allozyme data.

Craterocephalus (Atherinidae) neighbour joining tree based on the entire cyt. B gene (1140 bases). Jukes-Cantor is the substitution model used to calculate distances.

Craterocephalus (Atherinidae) parsimony tree (one of 10) based on the entire cyt. B gene (1140 bases) (1000 reps).

Craterocephalus (Atherinidae) consensus tree for the 10 parsimony trees (1000 reps). It is based on the entire cyt. B gene (1140 bases).

Craterocephalus fast bootstrap tree (1000 reps) based on the entire cyt. B gene (1140 baes).

Craterocephalus collection localities. Note, not all localities shown on this figure are present on the tree (ie, in black 6, 8, 11, in red 6 and 8).

Craterocephalus (Atherinidae) neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Craterocephalus (Atherinidae) parsimony tree (one of x) based on the first half of the cyt. B gene (601 bases) (1000 reps).

Craterocephalus (Atherinidae) consensus tree for the x parsimony trees. It is based on the first half of the cyt. B gene (601 bases).

Craterocephalus fast bootstrap tree (1000 reps) based on the first half of the cyt. B gene (601 baes).

Chlamydogobius (Gobiidae) neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Chlamydogobius fast bootstrap tree (1000 reps) based on the first half of the cyt. B gene (601 bases).

Chlamydogobius parsimony tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Pseudomugil neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Pseudomugil fast bootstrap tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Pseudomugil parsimony tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Pseudomugil neighbour joining tree based on the first intron in the S7 gene (500 bases). Jukes-Cantor is the substitution model used to calculate distances.

Pseudomugil parsimony tree (100 reps) based on the first intron in the S7 gene (500 bases).

Hypseleotris neighbour joining tree based on the last half of the ND2 gene (600 bases).

Locality data for the Philypnodon tree.

Philypnodon neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Philypnodon fast bootstrap tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Philypnodon parsimony tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Retropinna neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Retropinna parsimony tree (100 reps) based on the first half of the cyt. B gene (601 bases).

Galaxiella pusilla neighbour joining tree based on the first half of the cyt. B gene (601 bases). Jukes-Cantor is the substitution model used to calculate distances.

Galaxiella pusilla parsimony consensus tree based on the first half of the cyt. B gene (601 bases).

Locality map for Galaxiella pusilla samples.

Have you seen my Masters thesis on the biogeography of Australian freshwater fishes?

More will be coming as the results flow in.

If you have any questions please feel free to email Peter Unmack at